Oscar Manuel Lima Dias
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Data da última atualização
»Last update
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29/09/2014 |
Dados pessoais (Personal data)
Nome completo
Full name |
Oscar Manuel Lima Dias |
Nome em citações bibliográficas
Quoting name |
Dias, O. |
Domínio científico de atuação
Scientific domain |
Engenharia e Tecnologia-Biotecnologia Industrial. Engenharia e Tecnologia-Engenharia Electrotécnica, Electrónica e Informática.
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Endereço profissional
Professional address |
Universidade do Minho Escola de Engenharia Centro de Engenharia Biológica (CEB) - Laboratório Associado IBB Universidade do Minho, Campus de Gualtar Braga 4710-057 Braga Portugal Telefone: (+351)253604421 Correio electrónico: odias@deb.uminho.pt |
Sexo
Gender |
Masculino»Male |
Graus Académicos
(Academic Degrees)
2009-2013 |
Doutoramento Phd |
Programa Doutoral em Engenharia Química e Biológica
(4 anos » years)
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Universidade do Minho,
Portugal.
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2006-2008 |
Mestrado Master degree |
Mestrado em Informática.
Universidade do Minho,
Portugal.
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1999-2005 |
Licenciatura Licentiate degree |
Engenharia Biológica.
Universidade do Minho,
Portugal.
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Vínculos profissionais
(Professional Positions)
Jul/2013-Actual |
Outra Situação |
Fev/2013-Jul/2013 |
Assistente de Investigação |
Mar/2008-Dez/2008 |
Assistente de Investigação |
Out/2006-Mar/2008 |
Assistente de Investigação |
Línguas (Languages)
Compreende Understandig |
Inglês (Bem), Francês (Bem), Espanhol (Bem). |
Fala Speaking |
Inglês (Bem), Francês (Bem), Espanhol (Pouco). |
Lê Reading |
Inglês (Bem), Francês (Bem), Espanhol (Pouco). |
Escreve Writing |
Inglês (Bem), Francês (Pouco), Espanhol (Razoavelmente). |
Produção científica, técnica e artística/cultural
(Scientific, technical and artistical/cultural
production)
Capítulos de livros publicados Published book chapters |
1. |
Barbosa, Pedro; Dias, Oscar; Arrais, Joel P; Rocha, Miguel. 2014. Metagenomic Analysis of the Saliva Microbiome with Merlin. In 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014), ed. Julio Saez-RodriguezMiguel P. RochaFlorentino Fdez-RiverolaJuan F. De Paz Santana, 191 - 199. ISBN: 978-3-319-07580-8. Cham: Springer International Publishing.
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2. |
Dias, O.; Rocha, Isabel. 2013. Systems Biology in Fungi. In Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi, 1 - 1. ISBN: 9781466559868. Boca Raton: CRC Press.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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3. |
Dias, O.; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. 2010. Merlin: Metabolic models reconstruction using genome-scale information. In Computer Applications in Biotechnology, ed. Julio R. Banga, Philippe Bogaerts, Jan F.M. Van Impe, Denis Dochain, Ilse Smets, 120 - 125. . Belgium: IFAC-PapersOnline.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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4. |
Pinto, José P; Dias, Oscar; Lourenço, Anália; Carneiro, Sónia; Ferreira, Eugénio C; Rocha, Isabel; Rocha, Miguel. 2009. Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. In Advances in Soft Computing, ed. Juan M. Corchado, Juan F. Paz, Miguel P. Rocha, Florentino Fernández Riverola, 92 - 101. ISBN: 978-3-540-85860-7. Berlin, Heidelberg: Springer Berlin Heidelberg.
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Artigos em revistas com arbitragem científica Papers in periodics with scientific refereeing |
1. |
Dias, Oscar; Pereira, Rui; Gombert, Andreas K; Ferreira, Eugénio C; Rocha, Isabel. 2014. " iOD907, the first genome-scale metabolic model for the milk yeast Kluyveromyces lactis", Biotechnology Journal 9, 6: 776 - 790.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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2. |
Dias, O.; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. 2014. "Reconstructing genome-scale metabolic models with merlin", Nucleic Acids Research, 1: 1 - 10. |
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3. |
Gomes, Daniel; Aguiar, Tatiana Q; Dias, Oscar; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2014. "Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with
Saccharomyces cerevisiae and Kluyveromyces lactis", BMC Genomics 15, 1: 810 - 810.
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4. |
Dias, Oscar; Gombert, Andreas K; Ferreira, Eugénio C; Rocha, Isabel. 2012. "Genome-wide metabolic (re-) annotation of Kluyveromyces lactis", BMC Genomics 13, 1: 517 - 517.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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5. |
Mesquita, D.P.; Dias, O.; Amaral, António L; Ferreira, E.C.. 2010. "A Comparison between Bright Field and Phase-Contrast Image Analysis Techniques in Activated Sludge Morphological Characterization", Microscopy and Microanalysis 16, 02: 166 - 174.
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6. |
Mesquita, D.P.; Dias, O.; Elias, R.A.V.; Amaral, António L; Ferreira, E.C.. 2010. "Dilution and Magnification Effects on Image Analysis Applications in Activated Sludge Characterization", Microscopy and Microanalysis 16, 05: 561 - 568.
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7. |
Mesquita, Daniela P; Dias, Oscar; Dias, Ana M; Amaral, António L; Ferreira, Eugénio C. 2009. "Correlation between sludge settling ability and image analysis information using partial least squares", Analytica Chimica Acta 642, 1-2: 94 - 101.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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8. |
Mesquita, D. P; Dias, O.; Amaral, António L; Ferreira, E. C. 2008. "Monitoring of activated sludge settling ability through image analysis: validation on full-scale wastewater treatment plants", Bioprocess and Biosystems Engineering 32, 3: 361 - 367.
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Trabalhos completos/resumidos em eventos com arbitragem científica Papers in conference proceedings with scientific refereeing |
1. |
Dias, O.; Liu, Filipe; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. 2014. "Prediction of protein subunits using KEGG BRITE", Trabalho apresentado em COBRA 2014 - 3rd Conference on Constraint-Based Reconstruction and Analysis, In COBRA 2014 - 3rd Conference on Constraint-Based Reconstruction and Analysis, Charlottesville. |
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2. |
Gomes, Daniel; Dias, O.; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2013. "Reconstruction of a genome-scale metabolic model for the filamentous fungus Ashbya gossypii", Trabalho apresentado em PYFF5 - 5th Conference on Physiology of Yeast and Filamentous Fungi, In PYFF5 - 5th Conference on Physiology of Yeast and Filamentous Fungi, Montpellier. |
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3. |
Dias, O.; Gombert, Andreas K; Ferreira, Eugénio C; Rocha, Isabel. 2013. "Towards a genome-scale metabolic model for the Kluyveromyces lactis yeast. ", Trabalho apresentado em 9th European Congress of Chemical Engineering / 2nd European Congress of Applied Biotechnology, In 9th European Congress of Chemical Engineering / 2nd European Congress of Applied Biotechnology, The Hague.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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4. |
Dias, O.; Gombert, Andreas K; Ferreira, Eugénio C; Rocha, Isabel. 2013. "Towards a genome-scale metabolic model for the Kluyveromyces lactis yeast", Trabalho apresentado em 9th European Congress of Chemical Engineering / 2nd European Congress of Applied Biotechnology, In 9th European Congress of Chemical Engineering / 2nd European Congress of Applied Biotechnology - Book of abstracts, The Hague. |
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Gomes, Daniel; Dias, O.; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2012. "Reconstruction of a genome-scale metabolic model for the riboflavin producer fungus Ashbya gossypii", Trabalho apresentado em EMBO Conference Series - From Functional Genomics to Systems Biology, In EMBO Conference Series - From Functional Genomics to Systems Biology - Book of abstracts, Heidelberg. |
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Dias, Oscar; Ferreira, Eugénio C; Rocha, Isabel. 2011. "Towards genome-wide semi-automated transporter system annotation", Trabalho apresentado em 12th International Conference on Systems Biology – ICSB 2011, In Proceedings of the 12th International Conference on Systems Biology – ICSB 2011, Mannheim. |
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7. |
Dias, O.; Gomes, Daniel; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2011. "Revealing new biotechnological potentialities of the riboflavin producer fungus Ashbya gossypii by means of the construction
and analysis of its metabolic network", Trabalho apresentado em MicroBiotec'11, In MicroBiotec'11- Book of Abstracts, Braga. |
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8. |
Dias, Oscar; Rocha, Miguel; Rocha, Isabel; Ferreira, Eugénio C. 2009. " Metabolic reconstruction of less characterized microorganisms: a new methodology for reaction identification from genome
sequencing data.", Trabalho apresentado em JORNADAS DE BIOINFORMÁTICA, In JB'2009 - Challenges in Bioinformatics : proceedings, Lisboa.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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9. |
Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2008. "Bright field versus phase contrast microscopy in activated sludge image acquisition methodologies", Trabalho apresentado em Chemical and Biological Engineering Conference - CHEMPOR 2008, In Proceedings of the 10th International Chemical and Biological Engineering Conference - CHEMPOR 2008, Braga.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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10. |
Dias, Oscar; Mesquita, Daniela P; Amaral, António L; Ferreira, Eugénio C. 2008. "Dilution effects on aggregates and filaments contents in automated image analysis methodologies", Trabalho apresentado em International Symposium on Sanitary and Environmental Engineering : SIDISA 08, In Proceedings of the International Symposium on Sanitary and Environmental Engineering : SIDISA 08, Florence.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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11. |
Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2008. "Evaluation of activated sludge systems by image analysis procedures", Trabalho apresentado em International Symposium on Sanitary and Environmental Engineering: SIDISA 08, In Proceedings of the International Symposium on Sanitary and Environmental Engineering: SIDISA 08, Florence.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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12. |
Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2008. "Relationship between sludge volume index and biomass structure within activated sludge systems", Trabalho apresentado em XVII Congresso Brasileiro de Engenharia Química - COBEQ 2008, In Anais do XVII Congresso Brasileiro de Engenharia Química - COBEQ 2008, Recife.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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13. |
Mesquita, Daniela P; Dias, O.; Dias, Ana M; Amaral, António L; Ferreira, Eugénio C. 2008. "Correlation between sludge settleability and image analysis information using Partial Least Squares ", Trabalho apresentado em CAC2008 - Proceedings of the 11th International Conference on Chemometrics in Analytical Chemistry, In CAC2008 - Proceedings of the 11th International Conference on Chemometrics in Analytical Chemistry, Montpellier. |
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Mesquita, Daniela P; Dias, Oscar; Dias, Ana M; Ferreira, Eugénio C. 2007. "Monitoring activated sludge systems from wastewater treatment plants: automated image analysis procedures and their relation
with operating parameters", Trabalho apresentado em Congresso Micro '07 - Biotec '07 - XXIII JPG, In Livro de Actas do Congresso Micro '07 - Biotec '07 - XXIII JPG, Lisboa.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
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Trabalhos completos/resumidos em eventos sem arbitragem científica Papers in conference proceedings without scientific refereeing |
1. |
Dias, O.; Gomes, Daniel; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2012. "Reconstructing genome-scale metabolic models with merlin : the Ashbya gossypii case study", Trabalho apresentado em 3rd Meeting of the Institute for Biotechnology and Bioengineering, In 3rd Meeting of the Institute for Biotechnology and Bioengineering - Book of Abstracts, Lisboa. |
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Software sem registo ou patente Software without patent or official record |
1. |
Dias, Oscar. merlin - metabolic models reconstruction using genome-scale information,2010.
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
Apresentação oral de trabalho Oral work presentation |
1. |
Dias, O.; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. Merlin: Metabolic models reconstruction using genome-scale information,11th International Symposium on Computer Applications in Biotechnology - CAB 2010,Leuven,2010 (Simpósio).
![Homepage da produção](/wayback/20150516215432im_/http://www.degois.pt/imagens/degois/home16.png) |
2. |
Dias, O.; Mesquita, Daniela P; Amaral, António L; Ferreira, Eugénio C. Dilution effects on aggregates and filaments contents in automated image analysis methodologies,International Symposium on Sanitary and Environmental Engineering : SIDISA 08,Florence,2008 (Simpósio). |
Indicadores de produção
(Production indicators)
Produção científica
Scientific production |
Produção técnica
Technical production |
Produção científica Scientific production |
27 |
Livros e capítulos Books and book chapters |
4 |
Capítulos de livros publicados Published book chapters |
4 |
Artigos científicos em revistas Papers in periodics |
8 |
Com arbitragem científica With scientific refereeing |
8 |
Trabalhos em eventos Papers in conference proceedings |
15 |
Com arbitragem científica With scientific refereeing |
14 |
Sem arbitragem científica Without scientific refereeing |
1 |
Produção técnica Technical production |
3 |
Software sem registo ou patente Software without patent or official record |
1 |
Outros tipos de produção técnica Other technical production |
2 |
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