Oscar Manuel Lima Dias. Concluiu Programa Doutoral em Engenharia Química e Biológica pela Universidade do Minho em 2013. Publicou 8 artigos em revistas especializadas e 17 trabalhos em atas de eventos, possui 4 capítulos de livros publicados. Possui 1 software e outros 5 itens de produção técnica. Entre 2010 e 2015 participou em 4 projetos de investigação. Atualmente participa em 2 projetos de investigação. Atua nas áreas de Engenharia e Tecnologia com ênfase em Biotecnologia Industrial e Engenharia e Tecnologia com ênfase em Engenharia Eletrotécnica, Eletrónica e Informática. Nas suas atividades profissionais interagiu com 19 colaboradores em co-autorias de trabalhos científicos. No seu curriculum DeGóis os termos mais frequentes na contextualização da produção científica, tecnológica e artístico-cultural são: Metabolic Engineering, Systems Biology, Bioinformatics, merlin, Metabolic Models Reconstruction, Dynamics and Control, Genome annotation, Genome-Scale Metabolic Models, Kluyveromyces lactis e metabolic functions.
Endereço de acesso a este CV: http://www.degois.pt/visualizador/curriculum.jsp?key=4887530253329669

Nome completo Full name	Oscar Manuel Lima Dias
Nome em citações bibliográficas Quoting name	Dias, O.
Domínio científico de atuação Scientific domain	Engenharia e Tecnologia-Biotecnologia Industrial. Engenharia e Tecnologia-Engenharia Electrotécnica, Electrónica e Informática.

Endereço profissional Professional address

Universidade do Minho Escola de Engenharia Centro de Engenharia Biológica (CEB) - Laboratório Associado IBB Universidade do Minho, Campus de Gualtar Braga 4710-057 Braga Portugal Telefone: (+351)253604421 Correio electrónico: odias@ceb.uminho.pt

Sexo Gender

Masculino»Male

2009-2013	Doutoramento Phd
Programa Doutoral em Engenharia Química e Biológica (4 anos » years) . Universidade do Minho, Portugal.

2006-2008	Mestrado Master degree
Mestrado em Informática. Universidade do Minho, Portugal.

1999-2005	Licenciatura Licentiate degree
Engenharia Biológica. Universidade do Minho, Portugal.

Universidade do Minho

Jul/2013-Actual

Outra Situação

Fev/2013-Jul/2013

Assistente de Investigação

Mar/2009-Fev/2013

Outra Situação

Mar/2008-Dez/2008

Assistente de Investigação

Out/2006-Mar/2008

Assistente de Investigação

Participação como Investigador Participation as Researcher

2015-2018 Analysis and optimization of industrial microorganisms under dynamic process conditions-Analysis and optimization of industrial microorganisms under dynamic process conditions

Referência do projeto»Project reference: ERA-IB-2/0002/2014.

2014-2017 Designer yeast strain library optimized for metabolic engineering applications-Designer yeast strain library optimized for metabolic engineering applications

Referência do projeto»Project reference: ERA-IB-2/0003/2013.

2012-2015 PEM - Metabolic Engineering Platform- PEM - Metabolic Engineering Platform

Referência do projeto»Project reference: ADI-QREN- 23060.

2012-2014 Caracterização dos princípios de design de circuitos metabólicos prevalentes-Finding the naturally evolved design principles of prevalent metabolic circuits

Referência do projeto»Project reference: PTDC/QUI-BIQ/119657/2010.

2011-2013 Reconstrução in silico de redes celulares de Streptococcus pneumoniae e avaliação do seu impacto na virulência-In silico reconstruction of Streptococcus pneumoniae cellular networks and their impact on virulence

Referência do projeto»Project reference: PTDC/EBB-EBI/113824/2009.

2010-2013 AshByofactory - Ashbya gossypii: uma fábrica celular manipulada por engenharia metabólica de sistemas-AshByofactory - Ashbya gossypii: a systems metabolic engineered cell factory

Referência do projeto»Project reference: PTDC/EBB-EBI/101985/2008.

Compreende Understandig	Inglês (Bem), Francês (Bem), Espanhol (Bem).
Fala Speaking	Inglês (Bem), Francês (Bem), Espanhol (Pouco).
Lê Reading	Inglês (Bem), Francês (Bem), Espanhol (Pouco).
Escreve Writing	Inglês (Bem), Francês (Pouco), Espanhol (Razoavelmente).

Capítulos de livros publicados Published book chapters

1.	Barbosa, Pedro; Dias, Oscar; Arrais, Joel P; Rocha, Miguel. 2014. Metagenomic Analysis of the Saliva Microbiome with Merlin.  In 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014), ed. Julio Saez-Rodriguez, Miguel P. Rocha, Florentino Fdez-Riverola, Juan F. De Paz Santana, 191 - 199. ISBN: 978-3-319-07580-8. Cham: Springer International Publishing.

2.	Dias, Oscar; Rocha, Isabel. 2013. Systems Biology in Fungi.  In Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi, ed. Russel Paterson and Nelson Lima, 1 - 1. ISBN: 9781466559868. Boca Raton: CRC Press.

3.	Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. 2010. Merlin: Metabolic models reconstruction using genome-scale information.  In Computer Applications in Biotechnology, ed. Julio R. Banga, Philippe Bogaerts, Jan F.M. Van Impe, Denis Dochain, Ilse Smets, 120 - 125. . Belgium: IFAC-PapersOnline.

4.	Pinto, José P; Dias, Oscar; Lourenço, Anália; Carneiro, Sónia; Ferreira, Eugénio C; Rocha, Isabel; Rocha, Miguel. 2009. Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis.  In 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 2008), ed. Juan M. CorchadoJuan F. PazMiguel P. RochaFlorentino Fernández Riverola, 92 - 101. ISBN: 978-3-540-85860-7. Berlin, Heidelberg: Springer Berlin Heidelberg.

Artigos em revistas com arbitragem científica Papers in periodics with scientific refereeing

1.	Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. 2015. "Reconstructing genome-scale metabolic models with merlin", Nucleic Acids Research 43, 8: 3899 - 3910.

2.	Dias, Oscar; Pereira, Rui; Gombert, Andreas K; Ferreira, Eugénio C; Rocha, Isabel. 2014. " iOD907, the first genome-scale metabolic model for the milk yeast Kluyveromyces lactis", Biotechnology Journal 9, 6: 776 - 790.

3.	Gomes, Daniel; Aguiar, Tatiana Q; Dias, Oscar; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2014. "Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis", BMC Genomics 15, 1: 810 - 810.

4.	Dias, Oscar; Gombert, Andreas K; Ferreira, Eugénio C; Rocha, Isabel. 2012. "Genome-wide metabolic (re-) annotation of Kluyveromyces lactis", BMC Genomics 13, 1: 517 - 517.

5.	Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2010. "A Comparison between Bright Field and Phase-Contrast Image Analysis Techniques in Activated Sludge Morphological Characterization", Microscopy and Microanalysis 16, 02: 166 - 174.

6.	Mesquita, Daniela P; Dias, Oscar; Elias, R.A.V.; Amaral, António L; Ferreira, Eugénio C. 2010. "Dilution and Magnification Effects on Image Analysis Applications in Activated Sludge Characterization", Microscopy and Microanalysis 16, 05: 561 - 568.

7.	Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2009. "Correlation between sludge settling ability and image analysis information using partial least squares", Analytica Chimica Acta 642, 1-2: 94 - 101.

8.	Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2008. "Monitoring of activated sludge settling ability through image analysis: validation on full-scale wastewater treatment plants", Bioprocess and Biosystems Engineering 32, 3: 361 - 367.

Trabalhos completos/resumidos em eventos com arbitragem científica Papers in conference proceedings with scientific refereeing

1.	Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. 2015. "MEtabolic models Reconstruction using genome scaLe INformation (merlin) - assessment and validation", Trabalho apresentado em Copenhagen Biosciences Conferences - 7th Conference: Cell Factories and Biosustainability, In Copenhagen Biosciences Conferences - 7th Conference: Cell Factories and Biosustainability - Abstract Book, Copenhagen.

2.	Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. 2015. "Merlin Latest Developments for Pathways Analysis", Trabalho apresentado em MPA2015 - Metabolic Pathway Analysis 2015, In MPA2015 - Metabolic Pathway Analysis: Programme and Abstracts, Braga.

3.	Dias, Oscar; Saraiva, João; Ferreira, Eugénio C; Rocha, Isabel. 2015. "Towards a Genome-Scale Metabolic Model of the Streptococcus Pneumoniae R6 Avirulent Strain", Trabalho apresentado em COBRA 2015 - 4th Conference on Constraint-Based Reconstruction and Analysis, In COBRA 2015 - 4th Conference on Constraint-Based Reconstruction and Analysis conference proceedings, Heidelberg.

4.	Dias, Oscar; Liu, Filipe; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. 2014. "Prediction of protein subunits using KEGG BRITE", Trabalho apresentado em COBRA 2014 - 3rd Conference on Constraint-Based Reconstruction and Analysis, In COBRA 2014 - 3rd Conference on Constraint-Based Reconstruction and Analysis conference proceedings, Charlottesville.

5.	Gomes, Daniel; Dias, Oscar; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2013. "Reconstruction of a genome-scale metabolic model for the filamentous fungus Ashbya gossypii", Trabalho apresentado em PYFF5 - 5th Conference on Physiology of Yeast and Filamentous Fungi, In PYFF5 - 5th Conference on Physiology of Yeast and Filamentous Fungi, Montpellier.

6.	Dias, Oscar; Gombert, Andreas K; Ferreira, Eugénio C; Rocha, Isabel. 2013. "Towards a genome-scale metabolic model for the Kluyveromyces lactis yeast. ", Trabalho apresentado em 9th European Congress of Chemical Engineering / 2nd European Congress of Applied Biotechnology, In 9th European Congress of Chemical Engineering / 2nd European Congress of Applied Biotechnology, The Hague.

7.	Gomes, Daniel; Dias, Oscar; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2012. "Reconstruction of a genome-scale metabolic model for the riboflavin producer fungus Ashbya gossypii", Trabalho apresentado em EMBO Conference Series - From Functional Genomics to Systems Biology, In EMBO Conference Series - From Functional Genomics to Systems Biology - Book of abstracts, Heidelberg.

8.	Dias, Oscar; Ferreira, Eugénio C; Rocha, Isabel. 2011. "Towards genome-wide semi-automated transporter system annotation", Trabalho apresentado em 12th International Conference on Systems Biology – ICSB 2011, In Proceedings of the 12th International Conference on Systems Biology – ICSB 2011, Mannheim.

9.	Dias, Oscar; Gomes, Daniel; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2011. "Revealing new biotechnological potentialities of the riboflavin producer fungus Ashbya gossypii by means of the construction and analysis of its metabolic network", Trabalho apresentado em MicroBiotec'11, In MicroBiotec'11- Book of Abstracts, Braga.

10.	Dias, Oscar; Rocha, Miguel; Rocha, Isabel; Ferreira, Eugénio C. 2009. " Metabolic reconstruction of less characterized microorganisms: a new methodology for reaction identification from genome sequencing data.", Trabalho apresentado em JORNADAS DE BIOINFORMÁTICA, In JB'2009 - Challenges in Bioinformatics : proceedings, Lisboa.

11.	Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2008. "Bright field versus phase contrast microscopy in activated sludge image acquisition methodologies", Trabalho apresentado em Chemical and Biological Engineering Conference - CHEMPOR 2008, In Proceedings of the 10th International Chemical and Biological Engineering Conference - CHEMPOR 2008, Braga.

12.	Dias, Oscar; Mesquita, Daniela P; Amaral, António L; Ferreira, Eugénio C. 2008. "Dilution effects on aggregates and filaments contents in automated image analysis methodologies", Trabalho apresentado em International Symposium on Sanitary and Environmental Engineering : SIDISA 08, In Proceedings of the International Symposium on Sanitary and Environmental Engineering : SIDISA 08, Florence.

13.	Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2008. "Evaluation of activated sludge systems by image analysis procedures", Trabalho apresentado em International Symposium on Sanitary and Environmental Engineering: SIDISA 08, In Proceedings of the International Symposium on Sanitary and Environmental Engineering: SIDISA 08, Florence.

14.	Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2008. "Relationship between sludge volume index and biomass structure within activated sludge systems", Trabalho apresentado em XVII Congresso Brasileiro de Engenharia Química - COBEQ 2008, In Anais do XVII Congresso Brasileiro de Engenharia Química - COBEQ 2008, Recife.

15.	Mesquita, Daniela P; Dias, Oscar; Amaral, António L; Ferreira, Eugénio C. 2008. "Correlation between sludge settleability and image analysis information using Partial Least Squares ", Trabalho apresentado em CAC2008 - Proceedings of the 11th International Conference on Chemometrics in Analytical Chemistry, In CAC2008 - Proceedings of the 11th International Conference on Chemometrics in Analytical Chemistry, Montpellier.

16.	Mesquita, Daniela P; Dias, Oscar; Ferreira, Eugénio C. 2007. "Monitoring activated sludge systems from wastewater treatment plants: automated image analysis procedures and their relation with operating parameters", Trabalho apresentado em Congresso Micro '07 - Biotec '07 - XXIII JPG, In Livro de Actas do Congresso Micro '07 - Biotec '07 - XXIII JPG, Lisboa.

Trabalhos completos/resumidos em eventos sem arbitragem científica Papers in conference proceedings without scientific refereeing

1.	Dias, Oscar; Gomes, Daniel; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. 2012. "Reconstructing genome-scale metabolic models with merlin : the Ashbya gossypii case study", Trabalho apresentado em 3rd Meeting of the Institute for Biotechnology and Bioengineering, In 3rd Meeting of the Institute for Biotechnology and Bioengineering - Book of Abstracts, Lisboa.

Software sem registo ou patente Software without patent or official record

1.	Dias, Oscar. merlin - metabolic models reconstruction using genome-scale information,2010.

Apresentação oral de trabalho Oral work presentation

1.	Dias, Oscar; Rocha, Isabel; Gombert, Andreas K; Ferreira, Eugénio C. Towards a genome-scale metabolic model for the Kluyveromyces lactis yeast,2015 (Congresso).

2.	Dias, Oscar; Gombert, Andreas K; Ferreira, Eugénio C; Rocha, Isabel. iOD962 - the first genome-scale metabolic model of Kluyveromyces lactis,Bioinformatics Open Days 2013,Braga,2013 (Conferência ou palestra).

3.	Dias, Oscar; Gomes, Daniel; Ferreira, Eugénio C; Domingues, Lucília; Rocha, Isabel. Reconstructing genome-scale metabolic models with merlin: the Ashbya gossypii case study,3rd Meeting of the Institute for Biotechnology and Bioengineering,Lisboa,2012 (Conferência ou palestra).

4.	Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C; Rocha, Isabel. Merlin: Metabolic models reconstruction using genome-scale information,11th International Symposium on Computer Applications in Biotechnology - CAB 2010,Leuven,2010 (Simpósio).

5.	Dias, Oscar; Mesquita, Daniela P; Amaral, António L; Ferreira, Eugénio C. Dilution effects on aggregates and filaments contents in automated image analysis methodologies,International Symposium on Sanitary and Environmental Engineering : SIDISA 08,Florence,2008 (Simpósio).

Produção científica Scientific production

Produção técnica Technical production

Total

Produção científica Scientific production

29

Livros e capítulos Books and book chapters

4

Capítulos de livros publicados Published book chapters

4

Artigos científicos em revistas Papers in periodics

8

Com arbitragem científica With scientific refereeing

8

Trabalhos em eventos Papers in conference proceedings

17

Com arbitragem científica With scientific refereeing

16

Sem arbitragem científica Without scientific refereeing

1

Total

Produção técnica Technical production

6

Software

1

Software sem registo ou patente Software without patent or official record

1

Outros tipos de produção técnica Other technical production

5

	Eugénio Manuel de Faria Campos Ferreira
	Filipe Alexandre Wang Liu