João Carneiro (h-index and h10-index of 11; 455 citations, total number of publications of 24, 2 thesis) is specialized in population genetic data, genetic databases, and programming languages (e.g. Python, Perl) applied to the study of biological processes. He finished his PhD thesis in Biology at University of Porto and The Institute of Molecular Pathology and Immunology of the University of Porto (IPATIMUP) in 2013. His thesis was related with molecular dynamics simulations of non-B DNA conformations. João Carneiro has received a 2014 FCT postdoctoral fellowship to study the influence of non-B DNA conformations in mtDNA rearrangements at CIIMAR (Interdisciplinary Centre of Marine and Environmental Research). Through the last four years João Carneiro was advisor of students in bioinformatics and software tools for biological data analysis (DNA sequences analysis, phylogenetic calculations, python programming, next generation sequencing data analysis, statistical analysis with SAS University and R language).
Endereço de acesso a este CV: http://www.degois.pt/visualizador/curriculum.jsp?key=7632474699032048

Nome completo Full name	João M. S. M. F. Carneiro
Nome em citações bibliográficas Quoting name	Carneiro, João

Endereço profissional Professional address

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental CIIMAR Terminal de Cruzeiros de Leixões. Av. General Norton de Matos s/n Matosinhos Portugal Matosinhos 4450 Porto Portugal Telefone: (+351)223401800 Correio electrónico: joaomiguelsov@gmail.com Homepage: https://www2.ciimar.up.pt

Sexo Gender

Masculino»Male

2013	Doutoramento Phd
Biologia. Universidade do Porto, Portugal.

2007-2008	Mestrado Master degree
Genética forense (1 anos » years) . Universidade do Porto, Portugal.

1999-2006	Licenciatura Licentiate degree
Biologia (4 anos » years) . Universidade do Porto, Portugal.

Compreende Understandig	Português (Bem), Inglês (Bem).
Fala Speaking	Português (Bem), Inglês (Razoavelmente).
Lê Reading	Inglês (Bem).
Escreve Writing	Português (Bem), Inglês (Razoavelmente).

Artigos em revistas com arbitragem científica Papers in periodics with scientific refereeing

1.	Moreira, Filipa; Carneiro, João; Pereira, Filipe. 2017. "A proposal for standardization of transgenic reference sequences used in food forensics", Forensic Science International: Genetics 29, 29: e26 - e28.

2.	Carneiro, J.; Resende, Adriana; Pereira, F.. 2017. "The HIV oligonucleotide database (HIVoligoDB)", Database 2017, 1: 1 - 5.

3.	Carneiro, João; Pereira, Filipe. 2016. "EbolaID: An Online Database of Informative Genomic Regions for Ebola Identification and Treatment", PLOS Neglected Tropical Diseases 10, 7: e0004757 - e0.

4.	Froufe, Elsa; Gan, Han M; Lee, Yin P; Carneiro, João; Varandas, Simone; Teixeira, Amílcar; Zieritz, Alexandra; Sousa, Ronaldo; Lopes-Lima, Manuel. 2015. " The male and female complete mitochondrial genome sequences of the Endangered freshwater mussel Potomida littoralis (Cuvier, 1798) (Bivalvia: Unionidae) ", Mitochondrial DNA Part A 27, 5: 3571 - 35.

5.	Damas, Joana; Carneiro, João; Amorim, António; Pereira, Filipe. 2014. "MitoBreak: the mitochondrial DNA breakpoints database", Nucleic Acids Research 42, D1: D1261 - D1.

6.	Damas, Joana; Samuels, David C; Carneiro, João; Amorim, António; Pereira, Filipe. 2014. "Mitochondrial DNA Rearrangements in Health and Disease-A Comprehensive Study", Human Mutation 35, 1: 1 - 14.

7.	Carneiro, J.; Duarte-Pereira, Sara; Azevedo, Luísa; Castro, L. F. C; Aguiar, Paulo; Moreira, Irina S; Amorim, António; Silva, Raquel M; Dalby, Andrew R. 2013. "The Evolutionary Portrait of Metazoan NAD Salvage", PLoS ONE 8, 5: e64674 - e64674.

8.	Teixeira-Silva, Ana; Silva, Raquel M; Carneiro, João; Amorim, António; Azevedo, Luísa; Batzer, Mark A. 2013. "The Role of Recombination in the Origin and Evolution of Alu Subfamilies", PLoS ONE 8, 6: e64884 - e64884.

9.	Damas, Joana; Carneiro, Joao; Goncalves, Joana; Stewart, James B; Samuels, David C; Amorim, Antonio; Pereira, Filipe. 2012. "Mitochondrial DNA deletions are associated with non-B DNA conformations", Nucleic Acids Research 40, 16: 7606 - 76.

10.	van Asch, B; Pereira, F.; Santos, L. S; Carneiro, J.; Santos, N.; Amorim, A.. 2012. "Mitochondrial lineages reveal intense gene flow between Iberian wild boars and South Iberian pig breeds", Animal Genetics 43, 1: 35 - 41.

11.	Pereira, Vania; Gusmao, Leonor; Valente, Cristina; Pereira, Rui; Carneiro, Joao; Gomes, Iva; Morling, Niels; Amorim, Antonio; Prata, Maria J. 2012. "Refining the genetic portrait of Portuguese Roma through X-chromosomal markers", American Journal of Physical Anthropology 148, 3: 389 - 394.

12.	Carneiro, João; Pereira, Filipe; Amorim, António. 2012. "SPInDel: a multifunctional workbench for species identification using insertion/deletion variants", Molecular Ecology Resources 12, 6: 1190 - 11.

13.	Moleirinho, Ana; Carneiro, João; Matthiesen, Rune; Silva, Raquel M; Amorim, António; Azevedo, Luísa; Laudet, Vincent. 2011. "Gains, Losses and Changes of Function after Gene Duplication: Study of the Metallothionein Family", PLoS ONE 6, 4: e18487 - e1.

14.	van Asch, B; Silva Santos, L; Carneiro, Joa~o; Pereira, Filipe; Amorim, Anto¿?nio. 2011. " Identification of mtDNA Lineages of Sus scrofa by Multiplex Single Base Extension for the Authentication of Processed Food Products ", Journal of Agricultural and Food Chemistry 59, 13: 6920 - 69.

15.	van Asch, B; Pereira, Rui; Carneiro, João; Amorim, António. 2011. "Population assignment in seven Portuguese dog breeds and Iberian wolves", Forensic Science International: Genetics Supplement Series 3, 1: e556 - e5.

16.	Pereira, Filipe; Carneiro, João; Matthiesen, Rune; van Asch, B; Pinto, Nádia; Gusmão, Leonor; Amorim, António. 2010. "Identification of species by multiplex analysis of variable-length sequences", Nucleic Acids Research (NAR) 38, 22: 1 - 17.

17.	Carneiro, João. 2010. "A guide for mitochondrial DNA analysis in non-human forensic investigations", The Open Forensic Science Journal 2010, 3: 33 - 44.

18.	Carneiro, João. 2010. "Microevolution in a natural population of Daphnia longispina exposed to acid mine drainage", 213 Interdisciplinary Studies on Environmental Chemistry — Biological Responses to Contaminants ,, 1: 213 - 218.

19.	Azevedo, Luisa; Carneiro, Joao; van Asch, B; Moleirinho, Ana; Pereira, Filipe; Amorim, Antonio. 2009. "Epistatic interactions modulate the evolution of mammalian mitochondrial respiratory complex components", Bmc Genomics 10, 266: 1 - 12.

20.	Pereira, Filipe; Carneiro, João; Soares, Pedro; Maciel, Sónia; Nejmeddine, Fouad; Lenstra, Johannes A; Gusmão, Leonor; Amorim, António. 2008. "A multiplex primer extension assay for the rapid identification of paternal lineages in domestic goat (Capra hircus): Laying the foundations for a detailed caprine Y chromosome phylogeny", Molecular Phylogenetics and Evolution, 49: 663 - 668.

21.	Pereira, Filipe; Carneiro, João; Amorim, António. 2008. "Identification of species with DNA-based technology: current progress and challenges.", Recent Pat DNA Gene Seq 2, 3: 187 - 99.

22.	Pereira, F.; Soares, P.; Carneiro, J.; Pereira, L.; Richards, M. B; Samuels, D. C; Amorim, A.. 2008. "Evidence for Variable Selective Pressures at a Large Secondary Structure of the Human Mitochondrial DNA Control Region", Molecular Biology and Evolution 25, 12: 2759 - 27.

23.	Amorim, A.; Carneiro, J.. 2008. "The impact of silent alleles in kinship probability calculations", Forensic Science International: Genetics Supplement Series 1, 1: 638 - 639.

Trabalhos completos/resumidos em eventos sem arbitragem científica Papers in conference proceedings without scientific refereeing

1.	Carneiro, João. 2011. "Genetic diversity within the mitochondrial genome of Bursaphelenchus xylophilus", Trabalho apresentado em XLIII ONTA Meeting, Coimbra, Portugal, In XLIII ONTA Meeting, Coimbra, Portugal, Coimbra.

Outra produção científica Other scientific production

1.	Carneiro, João. 2013. "The Role of Non-coding DNA Structural Information in Phylogeny, Evolution and Disease". Porto: Universidade do Porto.

Apresentação oral de trabalho Oral work presentation

1.	Carneiro, João. Mitochondrial DNA evolutionary breakpoints are associated with non-B DNA conformations - João Carneiro, Matthias Bernt, Filipe Pereira,2018 (Outra).

2.	Carneiro, João. Unravelling the role of non-B DNA conformations in mitochondrial genome rearrangements - João Carneiro, Matthias Bernt, Filipe Pereira ,2017 (Poster).

Produção científica Scientific production

Produção técnica Technical production

Total

Produção científica Scientific production

25

Artigos científicos em revistas Papers in periodics

23

Com arbitragem científica With scientific refereeing

23

Trabalhos em eventos Papers in conference proceedings

1

Sem arbitragem científica Without scientific refereeing

1

Outros tipos de produção científica Other scientific production

1

Total

Produção técnica Technical production

2

Outros tipos de produção técnica Other technical production

2

Fouad Nejmeddine